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1

Polyposis and early cancer in a patient with low penetrant mutations in MSH6 and APC: hereditary colorectal cancer as a polygenic trait

Henrik Okkels, Lone Sunde, Karen Lindorff-Larsen, Ole Thorlacius-Ussing, Per Gandrup, Jan Lindebjerg, Peter StubbeTeglbjærg, John R. Oestergaard, Finn Cilius Nielsen, Henrik Bygum Krarup

Journal:

International Journal of Colorectal Disease

Year:

2006

Language:

english

File:

PDF, 91 KB

english, 2006

2

Dynamic graciloplasty for severe anal incontinence

Dr J. Christiansen, O. Ø. Rasmussen, K. Lindorff-Larsen

Journal:

British Journal of Surgery

Year:

1998

Language:

english

File:

PDF, 28 KB

english, 1998

3

Characterization of the residual structure in the unfolded state of the Δ131Δ fragment of staphylococcal nuclease

Christopher J. Francis, Kresten Lindorff-Larsen, Robert B. Best, Michele Vendruscolo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 337 KB

english, 2006

4

Atomic-Level Characterization of the Structural Dynamics of Proteins

Shaw, D. E., Maragakis, P., Lindorff-Larsen, K., Piana, S., Dror, R. O., Eastwood, M. P., Bank, J. A., Jumper, J. M., Salmon, J. K., Shan, Y.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.54 MB

english, 2010

5

Long-timescale molecular dynamics simulations of protein structure and function

John L Klepeis, Kresten Lindorff-Larsen, Ron O Dror, David E Shaw

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 169 KB

english, 2009

6

Protein folding and the organization of the protein topology universe

Kresten Lindorff-Larsen, Peter Røgen, Emanuele Paci, Michele Vendruscolo, Christopher M. Dobson

Journal:

Trends in Biochemical Sciences

Year:

2005

Language:

english

File:

PDF, 432 KB

english, 2005

7

[ACM Press the Conference - Portland, Oregon (2009.11.14-2009.11.20)] Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis - SC '09 - Millisecond-scale molecular dynamics simulations on Anton

Shaw, David E., Bowers, Kevin J., Chow, Edmond, Eastwood, Michael P., Ierardi, Douglas J., Klepeis, John L., Kuskin, Jeffrey S., Larson, Richard H., Lindorff-Larsen, Kresten, Maragakis, Paul, Moraes,

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

8

Mapping Long-Range Interactions in α-Synuclein using Spin-Label NMR and Ensemble Molecular Dynamics Simulations

Dedmon, Matthew M., Lindorff-Larsen, Kresten, Christodoulou, John, Vendruscolo, Michele, Dobson, Christopher M.

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 93 KB

english, 2005

9

[ACM Press the Conference - Portland, Oregon (2009.11.14-2009.11.20)] Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis - SC '09 - Millisecond-scale molecular dynamics simulations on Anton

Shaw, David E., Bowers, Kevin J., Chow, Edmond, Eastwood, Michael P., Ierardi, Douglas J., Klepeis, John L., Kuskin, Jeffrey S., Larson, Richard H., Lindorff-Larsen, Kresten, Maragakis, Paul, Moraes,

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

10

The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery

Papaleo, Elena, Saladino, Giorgio, Lambrughi, Matteo, Lindorff-Larsen, Kresten, Gervasio, Francesco Luigi, Nussinov, Ruth

Journal:

Chemical Reviews

Year:

2016

Language:

english

File:

PDF, 6.55 MB

english, 2016

11

Identifying Technical Procedures in Pulmonary Medicine That Should Be Integrated in a Simulation-Based Curriculum: A National General Needs Assessment

Nayahangan, Leizl Joy, Clementsen, Paul Frost, Paltved, Charlotte, Lindorff-Larsen, Karen Gilboe, Nielsen, Bjørn Ulrik, Konge, Lars

Journal:

Year:

2016

Language:

english

File:

PDF, 80 KB

english, 2016

12

Consensus on procedures to include in a simulation-based curriculum in ophthalmology: a national Delphi study

Thomsen, Ann Sofia Skou, la Cour, Morten, Paltved, Charlotte, Lindorff-Larsen, Karen Gilboe, Nielsen, Bjørn Ulrik, Konge, Lars, Nayahangan, Leizl Joy

Journal:

Acta Ophthalmologica (Blackwell)

Year:

2018

Language:

english

File:

PDF, 219 KB

english, 2018

13

Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations

Bottaro, Sandro, Bussi, Giovanni, Kennedy, Scott D., Turner, Douglas H., Lindorff-Larsen, Kresten

Journal:

Science Advances

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

14

Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias

Wang, Yong, Tian, Pengfei, Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Journal of Physical Chemistry B

Year:

2018

Language:

english

File:

PDF, 9.12 MB

english, 2018

15

Biomedical informatics as support to individual healthcare in hereditary colon cancer: the Danish HNPCC system

Inge T. Bernstein, Karen Lindorff-Larsen, Susanne Timshel, Carsten A. Brandt, Birger Dinesen, Mogens Fenger, Anne-Marie Gerdes, Lene H. Iversen, Mogens R. Madsen, Henrik Okkels, Lone Sunde, Hans B. Ra

Journal:

Year:

2011

Language:

english

File:

PDF, 413 KB

english, 2011

16

Thiol Alkylation below Neutral pH

Kresten Lindorff-Larsen, Jakob R. Winther

Journal:

Analytical Biochemistry

Year:

2000

Language:

english

File:

PDF, 57 KB

english, 2000

17

Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with ϕ value restraints

Emanuele Paci, Claire T. Friel, Kresten Lindorff-Larsen, Sheena E. Radford, Martin Karplus, Michele Vendruscolo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 919 KB

english, 2004

18

Improved side-chain torsion potentials for the Amber ff99SB protein force field

Kresten Lindorff-Larsen, Stefano Piana, Kim Palmo, Paul Maragakis, John L. Klepeis, Ron O. Dror, David E. Shaw

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

19

Interpreting Dynamically-Averaged Scalar Couplings in Proteins

Kresten Lindorff-Larsen, Robert B. Best, Michele Vendruscolo

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 267 KB

english, 2005

20

Simultaneous determination of protein structure and dynamics

Lindorff-Larsen, Kresten, Best, Robert B., DePristo, Mark A., Dobson, Christopher M., Vendruscolo, Michele

Journal:

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

21

Parallel protein-unfolding pathways revealed and mapped

Wright, Caroline F, Lindorff-Larsen, Kresten, Randles, Lucy G, Clarke, Jane

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 513 KB

english, 2003

22

Transition states for protein folding have native topologies despite high structural variability

Lindorff-Larsen, Kresten, Vendruscolo, Michele, Paci, Emanuele, Dobson, Christopher M

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.05 MB

english, 2004

23

BPPred: A Web-based computational tool for predicting biophysical parameters of proteins

Christian D. Geierhaas, Adrian A. Nickson, Kresten Lindorff-Larsen, Jane Clarke, Michele Vendruscolo

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 436 KB

english, 2007

24

Plasma secretin in response to pure bile salts and endogenous bile in man

S. Bondesen, H. Christensen, K. Lindorff-Larsen, O. B. Schaffalitzky De Muckadell

Journal:

Digestive Diseases and Sciences

Year:

1985

Language:

english

File:

PDF, 396 KB

english, 1985

25

Management and perception of hospital undernutrition—A positive change among Danish doctors and nurses

Karen Lindorff-Larsen, Henrik Højgaard Rasmussen, Jens Kondrup, Michael Staun, Karin Ladefoged

Journal:

Clinical Nutrition

Year:

2007

Language:

english

File:

PDF, 230 KB

english, 2007

26

PP134 THE NUTRITIONAL CARE PROCESS: A CROSS-SECTIONAL STUDY EMPHASIZING PATIENT INTERVIEWS AND 24-HOUR DIET RECALL

T. Beermann, M. Hoist, K. Lindorff-Larsen, H. Kristensen, M.N. Mortensen, H.H. Rasmussen

Journal:

Clinical Nutrition Supplements

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

27

PP133 THE NUTRITIONAL CARE PROCESS: A CROSS-SECTIONAL STUDY EMPHASIZING NUTRITION INFORMATION IN DANISH PATIENT RECORDS

T. Beermann, M. Hoist, K. Lindorff-Larsen, H. Kristensen, M.N. Mortensen, H.H. Rasmussen

Journal:

Clinical Nutrition Supplements

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

28

PP324 THE NUTRITIONAL CARE PROCESS: A CROSS-SECTIONAL STUDY EMPHASIZING BARRIERS, ATTITUDES AND KNOWLEDGE AMONG DOCTORS AND NURSES

T. Beermann, M. Hoist, K. Lindorff-Larsen, H. Kristensen, M.N. Mortensen, H.H. Rasmussen

Journal:

Clinical Nutrition Supplements

Year:

2010

Language:

english

File:

PDF, 44 KB

english, 2010

29

PP152-SUN IMPLEMENTATION OF GOOD NUTRITIONAL PRACTICE: A ONE-YEAR INTERVENTION STUDY IN A DANISH UNIVERSITY HOSPITAL

H.H. Rasmussen, T. Beermann, M. Mortensen, K. Lindorff-Larsen, M. Hoist

Journal:

Clinical Nutrition Supplements

Year:

2011

Language:

english

File:

PDF, 50 KB

english, 2011

30

PP170-MON IMPROVING COMMUNICATION IN NUTRITIONAL PRACTICE: AN INTERVENTION STUDY

M. Hoist, H.H. Rasmussen, M.N. Mortensen, K.G. Lindorff-Larsen, T. Beermann

Journal:

Clinical Nutrition Supplements

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

31

Paths of long-range communication in the E2 enzymes of family 3: a molecular dynamics investigation

Papaleo, Elena, Lindorff-Larsen, Kresten, De Gioia, Luca

Journal:

Physical Chemistry Chemical Physics

Year:

2012

Language:

english

File:

PDF, 2.97 MB

english, 2012

32

Structure and Dynamics of an Unfolded Protein Examined by Molecular Dynamics Simulation

Lindorff-Larsen, Kresten, Trbovic, Nikola, Maragakis, Paul, Piana, Stefano, Shaw, David E.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

33

Formation of Native and Non-native Interactions in Ensembles of Denatured ACBP Molecules from Paramagnetic Relaxation Enhancement Studies

Sigridur Kristjansdottir, Kresten Lindorff-Larsen, Wolfgang Fieber, Christopher M. Dobson, Michele Vendruscolo, Flemming M. Poulsen

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.19 MB

english, 2005

34

Structure of the Regulatory Apparatus of a Calcium-dependent Protein Kinase (CDPK): A Novel Mode of Calmodulin-target Recognition

Vidya Chandran, Elliott J. Stollar, Kresten Lindorff-Larsen, Jeffrey F. Harper, Walter J. Chazin, Christopher M. Dobson, Ben F. Luisi, John Christodoulou

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 707 KB

english, 2006

35

Computational Design and Experimental Testing of the Fastest-Folding β-Sheet Protein

Stefano Piana, Krishnarjun Sarkar, Kresten Lindorff-Larsen, Minghao Guo, Martin Gruebele, David E. Shaw

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 617 KB

english, 2011

36

Surprisingly high stability of barley lipid transfer protein, LTP1, towards denaturant, heat and proteases

Kresten Lindorff-Larsen, Jakob R Winther

Journal:

Year:

2001

Language:

english

File:

PDF, 156 KB

english, 2001

37

Detection of initiation sites in protein folding of the four helix bundle ACBP by chemical shift analysis

Kristofer Modig, Vibeke W. Jürgensen, Kresten Lindorff-Larsen, Wolfgang Fieber, Henrik G. Bohr, Flemming M. Poulsen

Journal:

Year:

2007

Language:

english

File:

PDF, 378 KB

english, 2007

38

Transition State Contact Orders Correlate with Protein Folding Rates

Emanuele Paci, Kresten Lindorff-Larsen, Christopher M. Dobson, Martin Karplus, Michele Vendruscolo

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 496 KB

english, 2005

39

Calculation of Mutational Free Energy Changes in Transition States for Protein Folding

Lindorff-Larsen, Kresten, Paci, Emanuele, Serrano, Luis, Dobson, Christopher M., Vendruscolo, Michele

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 169 KB

english, 2003

40

Permeation And Conformational Changes Of The Pore Domain Of The Kv1.2 Potassium Channel

Jensen, Mortenø, Borhani, David W., Dror, Ron O., Eastwood, Michael P., Lindorff-Larsen, Kresten, Maragakis, Paul, Shaw, David E.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 42 KB

english, 2009

41

How Robust Are Protein Folding Simulations with Respect to Force Field Parameterization?

Piana, Stefano, Lindorff-Larsen, Kresten, Shaw, David E.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 525 KB

english, 2011

42

Experimental Parameterization of an Energy Function for the Simulation of Unfolded Proteins

Norgaard, Anders B., Ferkinghoff-Borg, Jesper, Lindorff-Larsen, Kresten

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 336 KB

english, 2008

43

Atomistic Description of the Folding of a Dimeric Protein

Piana, Stefano, Lindorff-Larsen, Kresten, Shaw, David E.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 4.05 MB

english, 2013

44

Microsecond Molecular Dynamics Simulation Shows Effect of Slow Loop Dynamics on Backbone Amide Order Parameters of Proteins †

Maragakis, Paul, Lindorff-Larsen, Kresten, Eastwood, Michael P., Dror, Ron O., Klepeis, John L., Arkin, Isaiah T., Jensen, Morten Ø., Xu, Huafeng, Trbovic, Nikola, Friesner, Richard A., Palmer, Arthur

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 71 KB

english, 2008

45

Reliable and valid assessment of Lichtenstein hernia repair skills

Carlsen, C. G., Lindorff-Larsen, K., Funch-Jensen, P., Lund, L., Charles, P., Konge, L.

Journal:

Year:

2014

Language:

english

File:

PDF, 897 KB

english, 2014

46

How Fast-Folding Proteins Fold

Lindorff-Larsen, K., Piana, S., Dror, R. O., Shaw, D. E.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

47

Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations

Wriggers, Willy, Stafford, Kate A., Shan, Yibing, Piana, Stefano, Maragakis, Paul, Lindorff-Larsen, Kresten, Miller, Patrick J., Gullingsrud, Justin, Rendleman, Charles A., Eastwood, Michael P., Dror,

Journal:

Journal of Chemical Theory and Computation

Year:

2009

Language:

english

File:

PDF, 4.30 MB

english, 2009

48

Correction

Piana, Stefano, Lindorff-Larsen, Kresten, Shaw, David E.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 26 KB

english, 2011

49

A Sticky Cage can Slow Down Folding

Boomsma, Wouter, Lindorff-Larsen, Kresten

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 70 KB

english, 2013

50

Is Current Surgical Training Efficient? A National Survey

Carlsen, Charlotte Green, Lindorff-Larsen, Karen, Funch-Jensen, Peter, Lund, Lars, Morcke, Anne Mette, Ipsen, Merete, Charles, Peder

Journal:

Journal of Surgical Education

Year:

2014

Language:

english

File:

PDF, 261 KB

english, 2014